Hi Hiram, Thanks a lot for your support
We will take this action. Best & Regards Wuqi -----Original Message----- From: Hiram Clawson [mailto:[email protected]] Sent: Saturday, January 10, 2009 2:48 AM To: WANG Wuqi Cc: [email protected]; OW Jack Ling; Atif SHAHAB Subject: Re: [Genome] Genome browser upgrade problems Good Morning Wang Wuqi: Thank you for bringing this error to our intention. We can fix this in the makefiles. For your work-around, after your 'make install' step, go to the directory in the source tree: src/hg/hgNear and run the two commands: $ rsync -ar --exclude=CVS/ --exclude=.svn/ --delete hgGeneData \ ${DESTDIR}${CGI_BIN}/hgGeneData/ $ chmod -R a+rX ${DESTDIR}${CGI_BIN}/hgGeneData And in the directory: src/hg/near/hgNear and run the two commands: $ rsync -ar --exclude=CVS/ --exclude=.svn/ --delete hgNearData ${DESTDIR}${CGI_BIN}/ $ chmod -R a+rX ${DESTDIR}${CGI_BIN}/hgNearData We are adding those two commands to those makefiles to fix this problem. --Hiram WANG Wuqi wrote: > Hi Brooke Rhead, > > We download new jksrc packages and upgrade our GBrowser(version 196) > Depending on instruct document "README.building". > After building the CGI binaries, we found to lack some files > in /var/www/cgi-bin, like directories /hgGeneData, /hgNearData and so > on. > > We found below 2 errors so far: > ---------------------------------- > (1) Can not find genome.ra for taskbar "UCSC Genes" in assembly 'human' > see attachment page 1 > (2) For link > http://ucsc.gis.a-star.edu.sg/cgi-bin/hgGene?hgg_gene=uc004eeg.1&hgg_pro > t=P49335&hgg_chrom=chrX&hgg_start=82649940&hgg_end=82651431&hgg_type=kno > wnGene&db=hg18&hgsid=1647 > > see attachment page 2 > > By the way, old version cgi-bin works fine, so it is rolled back now. > > > Thanks & regards > > Wuqi _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
