Hi Hiram,
I try to load GFF format data, corresponding table is created but it
is empty table, i.e. there is not any data in this table.
My command below:
ldHgGene hg18 SL004_R00009 SL004_R00009.gff
Reading SL004_R00009.gff
Read 1 transcripts in 5626404 lines in 1 files
1 groups 22 seqs 1 sources 1 feature types
0 gene predictions
also I try to generate GP file but unsucessufu, i.e. 0 size
gp file:
ldHgGene -genePredExt -out=SL004_R00009.gp null null
SL004_R00009.gff
Reading SL004_R00009.gff
Read 1 transcripts in 100 lines in 1 files
1 groups 21 seqs 1 sources 1 feature types
0 gene predictions
A part of GP file:
-----------------------------------
chr1 SOLiD . 137990845 137990879 + .
. .
chr6 SOLiD . 143163367 143163398 + .
. .
chr1 SOLiD . 192641625 192641659 + .
. .
chr11 SOLiD . 107199280 107199314 - .
. .
chr13 SOLiD . 44880946 44880980 - .
. .
chr2 SOLiD . 22794859 22794893 + .
. .
chr5 SOLiD . 140368724 140368758 - .
. .
Thanks & Regards
Wuqi
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