Hi Valeria, These genes are not in the most recent UCSC human database (under the gene name as a protein). I was able to find a single mRNA sequence for one of them using a position/identifier query of "OPA5".
Human Aligned mRNA Search Results AF009299 - Homo sapiens clone OPA5 Cri-du-chat region mRNA. The alignment is short, not spliced, and fairly old (1997). Sequences do not have to be in RefSeq to be in the mRNA track. If you have trusted mRNA sequences from genbank (or another source that we incorporate) associated with these genes, a search by accession/identifier may locate alignment data for you to review. If you have the sequence but the browser does not, another option is to use BLAT to obtain an alignment. From there you can create a custom track, view against the genomic and other annotation, perform Table browser intersection queries against other annotation tracks, etc. If you need help with the Table browser, Blat, or any other tool as you work through this process, we are happy to offer more detailed help. Jennifer Jackson UCSC Genome Bioinformatics Group Vasta, Valeria wrote: > HELLO the following genes have not been annotated in the refseq, would > it be possible anyway to get the exon coordinates? > > Thanks > > > > > > OPA2 > > 4977 > > OPA4 > > 58156 > > OPA5 > > 692222 > > OPA6 > > 777778 > > OPA7 > > 100101244 > > > > > > Valeria Vasta > > > > Assay Development Scientist > > Molecular and Biochemical Genetics R&D > > Seattle Children's Research Institute > > 206-884-7674 Office > > 206-987-7660 Fax > > [email protected] > > C9S-9 1900 9th Ave, Seattle, WA 98101 > > > > Children's Hospital and Regional Medical Center is now Seattle Children's. > CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is > for the sole use of the intended recipient(s) and may contain confidential > and privileged information protected by law. Any unauthorized review, use, > disclosure or distribution is prohibited. If you are not the intended > recipient, please contact the sender by reply e-mail and destroy all copies > of the original message. > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
