Hello, The Affy All Exon track was recently missing from the Mar. 2006 (hg18) browser for a week or so. It was restored this morning. Please check this data and see if it meets your needs.
If you still need to move an annotation track from one genomic release to another, try using the liftOver tool. The basic idea would be to extract the data from one genome, covert the coordinates, and then add back as a custom track. Input files are within each assembly's download area: http://hgdownload.cse.ucsc.edu/downloads.html Source code is located here: http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads under "LiftOver tool" There is also a web based version that will work for smaller datasets (files can be uploaded, converted, and output as custom annotation tracks). http://genome.ucsc.edu/cgi-bin/hgLiftOver Thanks you, Jennifer Jackson UCSC Genome Bioinformatics Group Cosmas Giallourakis wrote: > Dear Genome Browser > > > I would like to view the tissue expression profiles from the all > affymetrix all exon arrays along with the Dnase I hypersensivity sites of > human CD4-T cells from Duke. In the past I was able to do so via selecting > the appropriate formatting for March 2004 browser. But now the expression > profiles are only listed for human July 2003 browser and the DnaseI > hypersensivity sites are listed n the March 2003. Is there a way to > display both annotations on the same format > > Kindly > Cosmas Giallourakis MD > Instructor > Harvard Medical School > Department of Genetics > Gasrointestinal Unit > Massachussetts General Hospital > Boston, MA 02115 > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
