OW Jack Ling wrote: > Hi Hiram, > > The /gbdb was last rsync on Aug 08 and we are referring to hg18 > assembly. > > Our queries is that if we use the exact word 'uc001acj.1' in the > position search in the Browser, we got an error mentioned by Wuqi but we > are able to find the 'uc001acj.1' in the knownGene table in Hg18 > database. Also if we go to the browser and search > "chr1:938,741-939,777", we do see the ' uc001acj.1' in the link and > description when clicking on it. Pls see attached for the print screen > of it. >
Attached below is the list of 734 hg18 tables that have updated since August 08. You should update your database, your /gbdb/ filesystem, and your genome browser source code. --Hiram affyAllExonProbes.MYI affyExonTissues.MYI affyExonTissuesGs.MYI affyExonTissuesGsExps.MYI affyExonTissuesGsMedian.MYI affyExonTissuesGsMedianDist.MYI affyExonTissuesGsMedianExps.MYI agilentCgh105a.MYI agilentCgh1x1m.MYI agilentCgh244a.MYI agilentCgh2x400k.MYI agilentCgh44k.MYI agilentCgh4x180k.MYI agilentCgh8x60k.MYI agilentCnv2x400k.MYI all_est.MYI all_mrna.MYI author.MYI bioCycMapDesc.MYI bioCycPathway.MYI ccdsGene.MYI ccdsInfo.MYI ccdsKgMap.MYI cds.MYI ceBlastTab.MYI cell.MYI cgapAlias.MYI cgapBiocDesc.MYI cgapBiocPathway.MYI chr*_chainOryLat2.MYI chr*_chainOryLat2Link.MYI chr*_chainTaeGut1.MYI chr*_chainTaeGut1Link.MYI chr*_cox_hap1_chainOryLat2.MYI chr*_cox_hap1_chainOryLat2Link.MYI chr*_cox_hap1_chainTaeGut1.MYI chr*_cox_hap1_chainTaeGut1Link.MYI chr*_cox_hap1_est.MYI chr*_cox_hap1_intronEst.MYI chr*_cox_hap1_mrna.MYI chr*_cox_hap1_rmskRM327.MYI chr*_est.MYI chr*_h2_hap1_chainOryLat2.MYI chr*_h2_hap1_chainOryLat2Link.MYI chr*_h2_hap1_chainTaeGut1.MYI chr*_h2_hap1_chainTaeGut1Link.MYI chr*_h2_hap1_est.MYI chr*_h2_hap1_mrna.MYI chr*_h2_hap1_rmskRM327.MYI chr*_intronEst.MYI chr*_mrna.MYI chr*_qbl_hap2_chainOryLat2.MYI chr*_qbl_hap2_chainOryLat2Link.MYI chr*_qbl_hap2_chainTaeGut1.MYI chr*_qbl_hap2_chainTaeGut1Link.MYI chr*_qbl_hap2_est.MYI chr*_qbl_hap2_intronEst.MYI chr*_qbl_hap2_mrna.MYI chr*_qbl_hap2_rmskRM327.MYI chr*_rmskRM327.MYI description.MYI development.MYI dgv.MYI dmBlastTab.MYI eioJcviNASNeg.MYI eioJcviNASPos.MYI encodeTbaAlignDec07.MYI encodeTbaBinConsDec07.MYI encodeTbaChaiConsDec07.MYI encodeTbaSummaryDec07.MYI ensGene.MYI ensGtp.MYI ensPep.MYI estOrientInfo.MYI extFile.MYI foldUtr3.MYI foldUtr5.MYI fox2ClipSeq.MYI fox2ClipSeqDensityForwardStrand.MYI fox2ClipSeqDensityReverseStrand.MYI gbCdnaInfo.MYI gbExtFile.MYI gbLoaded.MYI gbMiscDiff.MYI gbSeq.MYI gbStatus.MYI gbWarn.MYI geneName.MYI grp.MYI hgFindSpec.MYI hgdpGeo.MYI imageClone.MYI keggPathway.MYI keyword.MYI kg3ToKg4.MYI kgAlias.MYI kgColor.MYI kgProtAlias.MYI kgSpAlias.MYI kgTargetAli.MYI kgXref.MYI kiddEichlerDiscAbc10.MYI kiddEichlerDiscAbc11.MYI kiddEichlerDiscAbc12.MYI kiddEichlerDiscAbc13.MYI kiddEichlerDiscAbc14.MYI kiddEichlerDiscAbc7.MYI kiddEichlerDiscAbc8.MYI kiddEichlerDiscAbc9.MYI kiddEichlerDiscG248.MYI kiddEichlerToNcbi.MYI knownGene.MYI knownGeneOld3.MYI knownGenePep.MYI knownToEnsembl.MYI knownToTreefam.MYI library.MYI lsSnpPdb.MYI mgcFullMrna.MYI mgcGenes.MYI mmBlastTab.MYI mrnaClone.MYI mrnaOrientInfo.MYI multiz44way.MYI multiz44wayFrames.MYI multiz44waySummary.MYI nestedRepeatsRM327.MYI netOryLat2.MYI netTaeGut1.MYI omimGene.MYI omimGeneMap.MYI omimMorbidMap.MYI omimToKnownCanonical.MYI orfeomeGenes.MYI orfeomeMrna.MYI organism.MYI pfamDesc.MYI pgVenter.MYI pgWatson.MYI pgYh1.MYI pgYoruban3.MYI phastCons44way.MYI phastCons44wayPlacental.MYI phastCons44wayPrimates.MYI phastConsElements44way.MYI phastConsElements44wayPlacental.MYI phastConsElements44wayPrimates.MYI phyloP44wayAll.MYI phyloP44wayPlacMammal.MYI phyloP44wayPrimate.MYI productName.MYI refFlat.MYI refGene.MYI refLink.MYI refSeqAli.MYI refSeqStatus.MYI refSeqSummary.MYI seq.MYI sex.MYI snp128.MYI snp129.MYI snpArrayIllumina1M.MYI source.MYI spMrna.MYI tableDescriptions.MYI tissue.MYI trackDb.MYI transMapAlnRefSeq.MYI uwNucOccA375.MYI uwNucOccDennis.MYI uwNucOccMec.MYI wgEncodeBroadChipSeqPeaksGm12878Ctcf.MYI wgEncodeBroadChipSeqPeaksGm12878H3k27ac.MYI wgEncodeBroadChipSeqPeaksGm12878H3k27me3.MYI wgEncodeBroadChipSeqPeaksGm12878H3k36me3.MYI wgEncodeBroadChipSeqPeaksGm12878H3k4me1.MYI wgEncodeBroadChipSeqPeaksGm12878H3k4me2.MYI wgEncodeBroadChipSeqPeaksGm12878H3k4me3.MYI wgEncodeBroadChipSeqPeaksGm12878H3k9ac.MYI wgEncodeBroadChipSeqPeaksGm12878H4k20me1.MYI wgEncodeBroadChipSeqPeaksHuvecCtcf.MYI wgEncodeBroadChipSeqPeaksHuvecH3k27ac.MYI wgEncodeBroadChipSeqPeaksHuvecH3k27me3.MYI wgEncodeBroadChipSeqPeaksHuvecH3k36me3.MYI wgEncodeBroadChipSeqPeaksHuvecH3k4me1.MYI wgEncodeBroadChipSeqPeaksHuvecH3k4me2.MYI wgEncodeBroadChipSeqPeaksHuvecH3k4me3.MYI wgEncodeBroadChipSeqPeaksHuvecH3k9ac.MYI wgEncodeBroadChipSeqPeaksHuvecH3k9me1.MYI wgEncodeBroadChipSeqPeaksHuvecH4k20me1.MYI wgEncodeBroadChipSeqPeaksHuvecPol2b.MYI wgEncodeBroadChipSeqPeaksK562Ctcf.MYI wgEncodeBroadChipSeqPeaksK562H3k27ac.MYI wgEncodeBroadChipSeqPeaksK562H3k27me3.MYI wgEncodeBroadChipSeqPeaksK562H3k36me3.MYI wgEncodeBroadChipSeqPeaksK562H3k4me1.MYI wgEncodeBroadChipSeqPeaksK562H3k4me2.MYI wgEncodeBroadChipSeqPeaksK562H3k4me3.MYI wgEncodeBroadChipSeqPeaksK562H3k9ac.MYI wgEncodeBroadChipSeqPeaksK562H3k9me1.MYI wgEncodeBroadChipSeqPeaksK562H4k20me1.MYI wgEncodeBroadChipSeqPeaksK562Pol2b.MYI wgEncodeBroadChipSeqPeaksNhekCtcf.MYI wgEncodeBroadChipSeqPeaksNhekH3k27ac.MYI wgEncodeBroadChipSeqPeaksNhekH3k27me3.MYI wgEncodeBroadChipSeqPeaksNhekH3k36me3.MYI wgEncodeBroadChipSeqPeaksNhekH3k4me1.MYI wgEncodeBroadChipSeqPeaksNhekH3k4me2.MYI wgEncodeBroadChipSeqPeaksNhekH3k4me3.MYI wgEncodeBroadChipSeqPeaksNhekH3k9ac.MYI wgEncodeBroadChipSeqPeaksNhekH3k9me1.MYI wgEncodeBroadChipSeqPeaksNhekH4k20me1.MYI wgEncodeBroadChipSeqPeaksNhekPol2b.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878Control.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878Ctcf.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H3k27ac.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H3k27me3.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H3k36me3.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H3k4me1.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H3k4me2.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H3k4me3.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H3k9ac.MYI wgEncodeBroadChipSeqRawSignalRep1Gm12878H4k20me1.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878Control.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878Ctcf.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H3k27ac.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H3k27me3.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H3k36me3.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H3k4me1.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H3k4me2.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H3k4me3.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H3k9ac.MYI wgEncodeBroadChipSeqRawSignalRep2Gm12878H4k20me1.MYI wgEncodeBroadChipSeqSignalGm12878Control.MYI wgEncodeBroadChipSeqSignalGm12878Ctcf.MYI wgEncodeBroadChipSeqSignalGm12878H3k27ac.MYI wgEncodeBroadChipSeqSignalGm12878H3k27me3.MYI wgEncodeBroadChipSeqSignalGm12878H3k36me3.MYI wgEncodeBroadChipSeqSignalGm12878H3k4me1.MYI wgEncodeBroadChipSeqSignalGm12878H3k4me2.MYI wgEncodeBroadChipSeqSignalGm12878H3k4me3.MYI wgEncodeBroadChipSeqSignalGm12878H3k9ac.MYI wgEncodeBroadChipSeqSignalGm12878H4k20me1.MYI wgEncodeBroadChipSeqSignalHuvecControl.MYI wgEncodeBroadChipSeqSignalHuvecCtcf.MYI wgEncodeBroadChipSeqSignalHuvecH3k27ac.MYI wgEncodeBroadChipSeqSignalHuvecH3k27me3.MYI wgEncodeBroadChipSeqSignalHuvecH3k36me3.MYI wgEncodeBroadChipSeqSignalHuvecH3k4me1.MYI wgEncodeBroadChipSeqSignalHuvecH3k4me2.MYI wgEncodeBroadChipSeqSignalHuvecH3k4me3.MYI wgEncodeBroadChipSeqSignalHuvecH3k9ac.MYI wgEncodeBroadChipSeqSignalHuvecH3k9me1.MYI wgEncodeBroadChipSeqSignalHuvecH4k20me1.MYI wgEncodeBroadChipSeqSignalHuvecPol2b.MYI wgEncodeBroadChipSeqSignalK562Control.MYI wgEncodeBroadChipSeqSignalK562Ctcf.MYI wgEncodeBroadChipSeqSignalK562H3k27ac.MYI wgEncodeBroadChipSeqSignalK562H3k27me3.MYI wgEncodeBroadChipSeqSignalK562H3k36me3.MYI wgEncodeBroadChipSeqSignalK562H3k4me1.MYI wgEncodeBroadChipSeqSignalK562H3k4me2.MYI wgEncodeBroadChipSeqSignalK562H3k4me3.MYI wgEncodeBroadChipSeqSignalK562H3k9ac.MYI wgEncodeBroadChipSeqSignalK562H3k9me1.MYI wgEncodeBroadChipSeqSignalK562H4k20me1.MYI wgEncodeBroadChipSeqSignalK562Pol2b.MYI wgEncodeBroadChipSeqSignalNhekControl.MYI wgEncodeBroadChipSeqSignalNhekCtcf.MYI wgEncodeBroadChipSeqSignalNhekH3k27ac.MYI wgEncodeBroadChipSeqSignalNhekH3k27me3.MYI wgEncodeBroadChipSeqSignalNhekH3k36me3.MYI wgEncodeBroadChipSeqSignalNhekH3k4me1.MYI wgEncodeBroadChipSeqSignalNhekH3k4me2.MYI wgEncodeBroadChipSeqSignalNhekH3k4me3.MYI wgEncodeBroadChipSeqSignalNhekH3k9ac.MYI wgEncodeBroadChipSeqSignalNhekH3k9me1.MYI wgEncodeBroadChipSeqSignalNhekH4k20me1.MYI wgEncodeBroadChipSeqSignalNhekPol2b.MYI wgEncodeYaleChIPseqPeaksGm12878Cfos.MYI wgEncodeYaleChIPseqPeaksGm12878Jund.MYI wgEncodeYaleChIPseqPeaksGm12878Max.MYI wgEncodeYaleChIPseqPeaksGm12878Pol2.MYI wgEncodeYaleChIPseqPeaksHct116Tcf4.MYI wgEncodeYaleChIPseqPeaksHek293Pol2.MYI wgEncodeYaleChIPseqPeaksHelas3Largefragment.MYI wgEncodeYaleChIPseqPeaksHelas3Mouseigg.MYI wgEncodeYaleChIPseqPeaksHelas3Pol2.MYI wgEncodeYaleChIPseqPeaksHelas3ifngStat1.MYI wgEncodeYaleChIPseqPeaksHepg2Pol2.MYI wgEncodeYaleChIPseqPeaksHepg2Srebp1a.MYI wgEncodeYaleChIPseqPeaksHepg2Srebp2.MYI wgEncodeYaleChIPseqPeaksK562Cfos.MYI wgEncodeYaleChIPseqPeaksK562Cjun.MYI wgEncodeYaleChIPseqPeaksK562Cmyc.MYI wgEncodeYaleChIPseqPeaksK562Gata1.MYI wgEncodeYaleChIPseqPeaksK562Jund.MYI wgEncodeYaleChIPseqPeaksK562Max.MYI wgEncodeYaleChIPseqPeaksK562Nfe2.MYI wgEncodeYaleChIPseqPeaksK562Pol2.MYI wgEncodeYaleChIPseqPeaksK562Znf263.MYI wgEncodeYaleChIPseqPeaksNb4Pol2.MYI wgEncodeYaleChIPseqRawSignalGm12878Input.MYI wgEncodeYaleChIPseqRawSignalHct116Input.MYI wgEncodeYaleChIPseqRawSignalHek293Input.MYI wgEncodeYaleChIPseqRawSignalHelas3Input.MYI wgEncodeYaleChIPseqRawSignalHelas3ifngInput.MYI wgEncodeYaleChIPseqRawSignalK562Input.MYI wgEncodeYaleChIPseqRawSignalNb4Input.MYI wgEncodeYaleChIPseqRawSignalRep1Gm12878Cfos.MYI wgEncodeYaleChIPseqRawSignalRep1Gm12878Jund.MYI wgEncodeYaleChIPseqRawSignalRep1Gm12878Max.MYI wgEncodeYaleChIPseqRawSignalRep1Gm12878Pol2.MYI wgEncodeYaleChIPseqRawSignalRep1Hct116Tcf4.MYI wgEncodeYaleChIPseqRawSignalRep1Hek293Pol2.MYI wgEncodeYaleChIPseqRawSignalRep1Helas3Largefragment.MYI wgEncodeYaleChIPseqRawSignalRep1Helas3Mnase.MYI wgEncodeYaleChIPseqRawSignalRep1Helas3Mouseigg.MYI wgEncodeYaleChIPseqRawSignalRep1Helas3Nakeddna.MYI wgEncodeYaleChIPseqRawSignalRep1Helas3Pol2.MYI wgEncodeYaleChIPseqRawSignalRep1Helas3ifngStat1.MYI wgEncodeYaleChIPseqRawSignalRep1Hepg2Input.MYI wgEncodeYaleChIPseqRawSignalRep1Hepg2Pol2.MYI wgEncodeYaleChIPseqRawSignalRep1Hepg2Srebp1a.MYI wgEncodeYaleChIPseqRawSignalRep1Hepg2Srebp2.MYI wgEncodeYaleChIPseqRawSignalRep1K562Cfos.MYI wgEncodeYaleChIPseqRawSignalRep1K562Cjun.MYI wgEncodeYaleChIPseqRawSignalRep1K562Cmyc.MYI wgEncodeYaleChIPseqRawSignalRep1K562Gata1.MYI wgEncodeYaleChIPseqRawSignalRep1K562Jund.MYI wgEncodeYaleChIPseqRawSignalRep1K562Max.MYI wgEncodeYaleChIPseqRawSignalRep1K562Nfe2.MYI wgEncodeYaleChIPseqRawSignalRep1K562Pol2.MYI wgEncodeYaleChIPseqRawSignalRep1K562Znf263.MYI wgEncodeYaleChIPseqRawSignalRep1Nb4Pol2.MYI wgEncodeYaleChIPseqRawSignalRep2Gm12878Cfos.MYI wgEncodeYaleChIPseqRawSignalRep2Gm12878Jund.MYI wgEncodeYaleChIPseqRawSignalRep2Gm12878Max.MYI wgEncodeYaleChIPseqRawSignalRep2Gm12878Pol2.MYI wgEncodeYaleChIPseqRawSignalRep2Hct116Tcf4.MYI wgEncodeYaleChIPseqRawSignalRep2Hek293Pol2.MYI wgEncodeYaleChIPseqRawSignalRep2Helas3Largefragment.MYI wgEncodeYaleChIPseqRawSignalRep2Helas3Mnase.MYI wgEncodeYaleChIPseqRawSignalRep2Helas3Mouseigg.MYI wgEncodeYaleChIPseqRawSignalRep2Helas3Nakeddna.MYI wgEncodeYaleChIPseqRawSignalRep2Helas3Pol2.MYI wgEncodeYaleChIPseqRawSignalRep2Helas3ifngStat1.MYI wgEncodeYaleChIPseqRawSignalRep2Hepg2Input.MYI wgEncodeYaleChIPseqRawSignalRep2Hepg2Pol2.MYI wgEncodeYaleChIPseqRawSignalRep2Hepg2Srebp1a.MYI wgEncodeYaleChIPseqRawSignalRep2Hepg2Srebp2.MYI wgEncodeYaleChIPseqRawSignalRep2K562Cfos.MYI wgEncodeYaleChIPseqRawSignalRep2K562Cjun.MYI wgEncodeYaleChIPseqRawSignalRep2K562Cmyc.MYI wgEncodeYaleChIPseqRawSignalRep2K562Gata1.MYI wgEncodeYaleChIPseqRawSignalRep2K562Jund.MYI wgEncodeYaleChIPseqRawSignalRep2K562Max.MYI wgEncodeYaleChIPseqRawSignalRep2K562Nfe2.MYI wgEncodeYaleChIPseqRawSignalRep2K562Pol2.MYI wgEncodeYaleChIPseqRawSignalRep2K562Znf263.MYI wgEncodeYaleChIPseqRawSignalRep2Nb4Pol2.MYI wgEncodeYaleChIPseqRawSignalRep3Gm12878Cfos.MYI wgEncodeYaleChIPseqRawSignalRep3Hek293Pol2.MYI wgEncodeYaleChIPseqRawSignalRep3Helas3Nakeddna.MYI wgEncodeYaleChIPseqRawSignalRep3Helas3Pol2.MYI wgEncodeYaleChIPseqRawSignalRep3Hepg2Input.MYI wgEncodeYaleChIPseqRawSignalRep3Hepg2Pol2.MYI wgEncodeYaleChIPseqRawSignalRep3Hepg2Srebp1a.MYI wgEncodeYaleChIPseqRawSignalRep3Hepg2Srebp2.MYI wgEncodeYaleChIPseqRawSignalRep3K562Cfos.MYI wgEncodeYaleChIPseqRawSignalRep3Nb4Pol2.MYI wgEncodeYaleChIPseqSignalGm12878Cfos.MYI wgEncodeYaleChIPseqSignalGm12878Input.MYI wgEncodeYaleChIPseqSignalGm12878Jund.MYI wgEncodeYaleChIPseqSignalGm12878Max.MYI wgEncodeYaleChIPseqSignalGm12878Pol2.MYI wgEncodeYaleChIPseqSignalHct116Input.MYI wgEncodeYaleChIPseqSignalHct116Tcf4.MYI wgEncodeYaleChIPseqSignalHek293Input.MYI wgEncodeYaleChIPseqSignalHek293Pol2.MYI wgEncodeYaleChIPseqSignalHelas3Input.MYI wgEncodeYaleChIPseqSignalHelas3Largefragment.MYI wgEncodeYaleChIPseqSignalHelas3Mnase.MYI wgEncodeYaleChIPseqSignalHelas3Mouseigg.MYI wgEncodeYaleChIPseqSignalHelas3Nakeddna.MYI wgEncodeYaleChIPseqSignalHelas3Pol2.MYI wgEncodeYaleChIPseqSignalHelas3ifngInput.MYI wgEncodeYaleChIPseqSignalHelas3ifngStat1.MYI wgEncodeYaleChIPseqSignalHepg2Input.MYI wgEncodeYaleChIPseqSignalHepg2Pol2.MYI wgEncodeYaleChIPseqSignalHepg2Srebp1a.MYI wgEncodeYaleChIPseqSignalHepg2Srebp2.MYI wgEncodeYaleChIPseqSignalK562Cfos.MYI wgEncodeYaleChIPseqSignalK562Cjun.MYI wgEncodeYaleChIPseqSignalK562Cmyc.MYI wgEncodeYaleChIPseqSignalK562Gata1.MYI wgEncodeYaleChIPseqSignalK562Input.MYI wgEncodeYaleChIPseqSignalK562Jund.MYI wgEncodeYaleChIPseqSignalK562Max.MYI wgEncodeYaleChIPseqSignalK562Nfe2.MYI wgEncodeYaleChIPseqSignalK562Pol2.MYI wgEncodeYaleChIPseqSignalK562Znf263.MYI wgEncodeYaleChIPseqSignalNb4Input.MYI wgEncodeYaleChIPseqSignalNb4Pol2.MYI xenoEst.MYI xenoMrna.MYI xenoRefFlat.MYI xenoRefGene.MYI xenoRefSeqAli.MYI _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
