Hello, When you say compile track, do you mean that you ran "make" from the directory kent/src/hg/makeDb/trackDb ?
Some simple things to check. I am assuming that you used an existing track and copied that trackDb.ra file data to create your own. 1) What "group" was the track assigned to? This is where to look. You may want to make up your own group for your own local data. 2) Is the track set as visible? -- trackDb.visibility 3) Did you add the data to to the top level for the organism or down in the particular assembly's trackDb.ra file? Are there any tableName/shortLabel/longLable conflicts? 4) Did you create an html track description? If you want to send in the section of your trackDb.ra file with the track's data (to just Hiram and me) we can look at it and provide feedback. Please also send the exact command you used to run "make" to update the database, the path of the trackDb.ra file, and the cvs version of the trackDb.ra file that you started with. Jennifer Jackson UCSC Genome Bioinformatics Group WANG Wuqi wrote: > Hi Hiram, > > Sorry late for replying. > > This data can do custom track, no any problems. > > I want to do a permanent track for this data, and load data, add entry > in trackDb.ra and compile track are ok, but we can not see this track in > genome browser. > I can query this table from database and see many rows, also there is > this > track's info in table 'trackDb'. > > My problems is why this permanent track can not display in genome > browser? > > > Thanks & Regards > > Wuqi > > > > > -----Original Message----- > From: Hiram Clawson [mailto:[email protected]] > Sent: Thursday, June 11, 2009 1:16 AM > To: WANG Wuqi > Cc: [email protected]; OW Jack Ling; LEE Seow Eng > Subject: Re: Load Wiggle Error > > Your data is only on chr2, look at chr2 for your track. > > Look in your Apache error log to see if there are any > errors indicating what may be missing. > > Verify your custom track database configuration: > http://genomewiki.ucsc.edu/index.php/Using_custom_track_database > > --Hiram > > WANG Wuqi wrote: > >> Hi Hiram, >> >> The data of Wiggle format can be uploaded to our Genome browser mirror >> side >> and MySQL table has this data, no encounter any problems. >> >> But the problem is that we can not see this track in Genome browser. >> >> Source data as attachment >> >> Please help >> >> >> Thanks & Regards >> >> Wuqi >> > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
