Hello Ian, Please see our kgXref table: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/kgXref.txt.gz
This should have the information you are looking for. This data is also available from the Table Browser, and you can use various filters: http://genome.ucsc.edu/cgi-bin/hgTables I hope this information is helpful to you. Please don't hesitate to contact us again if you require further assistance. Kayla Smith UCSC Genome Bioinformatics Group ----- "Ian Haywood" <[email protected]> wrote: > Hi, > > I work at Lovelace Scientific Resources where my job for the past few > weeks has been to compile a list of important Knowngene ID tags, the > ones in the "uc123abc.0" format, retrieved from the "Tables" page on > your UCSC genome browser site. > > > > The problem is, I have data that references certain genes that aren't > in > UCSC format, but in RefSeq, Genebank, and other various formats > ("NM_12345", "A12345", etc.). The site allows for individually > compiling > a list of alternate gene accession numbers when I search for > individual > "uc" knowngene names, but the process is time-consuming and I have > literally hundreds of knowngenes that require all possible alternate > accession numbers. I need a faster way of compiling this list I > require. Please reply if you have any ideas to solve my problem. > > > > Thank you, > > > > Ian Haywood > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
