Thank you very much, Dr. Katrina and UCSC Genome Bioinformatics Group. Best Wishes.
Student. On Wed, Sep 15, 2010 at 1:40 PM, Katrina Learned <[email protected]>wrote: > Hi, > > Another track that might be of interest to you was just released at the end > of August, UCSF Brain Methyl, in the Regulation group. Here is an excerpt > from the description: > > "Genome wide methylation (MeDIP-seq and MRE-seq), histone H3 lysine 4 > trimethylation (H3K4me3) and gene expression (RNA-seq and RNA-seq (SMART)) > data were generated from postmortem human frontal cortex gray matter of a 57 > year-old male." > > Please see the track description here for more information: > http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=ucsfBrainMethyl > > Katrina Learned > UCSC Genome Bioinformatics Group > > > > Jennifer Jackson wrote, On 9/15/2010 11:18 AM: > >> Hello - >> >> Thank you for your patience while we gathered input from our in-house >> methylation expert, Venkat. Here is the feedback: >> >> I am not exactly sure what type of Methylation the Student has asked for: >> DNA, Protein or specific Histone Modification. >> >> We have two DNA Methylation ENCODE tracks: HAIB Methyl-seq and HAIB >> Methyl27. In addition we have a few tracks that look at specific methylation >> of Histone Markers: Broad Histone, UW Histone, ENCODE Regulation Super >> Track. Within the Regulation Super Track, we have two methylation >> modification tracks: Enhancer H3K4Me1 and Promoter H3K4Me3.None of these >> tracks have data specific for any given tissue, however they contain >> methylation data for specific Cell Lines. Each Cell Line was derived from >> some tissue, but do not represent any tissue in native form. >> >> Each configuration page contains a matrix of Cell Lines that are subtracks >> within the Methylation track. To find further information of each Cell Line, >> the user can click the specific Cell Line Hyperlink >> that will display information that UCSC has on that particular Cell Line. >> To find further information about specific Tissue derivative, the Browser >> links to outside resources (i.e. Vendor Information and Ontology Services). >> >> We hope this helps answer the question! >> >> Please feel free to contact the mailing list support team again if you >> would like more assistance. >> >> Warm regards, >> >> Jen >> UCSC Genome Browser Support >> >> On 9/6/10 1:00 PM, qcshare wrote: >> >> >>> Dear Professor, >>> I want to know the genome methylation information in different tissues >>> and >>> compare their methylation level. >>> Could you please give me some advices how can I use the UCSC to complish >>> this aim? >>> I have some liver methylation data, can I get other tissues, such as >>> sperm >>> etc., methylation data from the UCSC? >>> I am very sorry that I made this kind of question because I am a >>> beginner. >>> Thank you for your reply. >>> >>> Best Wishes. >>> >>> Student. >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >>> >> _______________________________________________ >> Genome maillist - [email protected] >> >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
