Hi, Another track that might be of interest to you was just released at the end of August, UCSF Brain Methyl, in the Regulation group. Here is an excerpt from the description:
"Genome wide methylation (MeDIP-seq and MRE-seq), histone H3 lysine 4 trimethylation (H3K4me3) and gene expression (RNA-seq and RNA-seq (SMART)) data were generated from postmortem human frontal cortex gray matter of a 57 year-old male." Please see the track description here for more information: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=ucsfBrainMethyl Katrina Learned UCSC Genome Bioinformatics Group Jennifer Jackson wrote, On 9/15/2010 11:18 AM: > Hello - > > Thank you for your patience while we gathered input from our in-house > methylation expert, Venkat. Here is the feedback: > > I am not exactly sure what type of Methylation the Student has asked > for: DNA, Protein or specific Histone Modification. > > We have two DNA Methylation ENCODE tracks: HAIB Methyl-seq and HAIB > Methyl27. In addition we have a few tracks that look at specific > methylation of Histone Markers: Broad Histone, UW Histone, ENCODE > Regulation Super Track. Within the Regulation Super Track, we have two > methylation modification tracks: Enhancer H3K4Me1 and Promoter > H3K4Me3.None of these tracks have data specific for any given tissue, > however they contain methylation data for specific Cell Lines. Each Cell > Line was derived from some tissue, but do not represent any tissue in > native form. > > Each configuration page contains a matrix of Cell Lines that are > subtracks within the Methylation track. To find further information of > each Cell Line, the user can click the specific Cell Line Hyperlink > that will display information that UCSC has on that particular Cell > Line. To find further information about specific Tissue derivative, the > Browser links to outside resources (i.e. Vendor Information and Ontology > Services). > > We hope this helps answer the question! > > Please feel free to contact the mailing list support team again if you > would like more assistance. > > Warm regards, > > Jen > UCSC Genome Browser Support > > On 9/6/10 1:00 PM, qcshare wrote: > >> Dear Professor, >> I want to know the genome methylation information in different tissues and >> compare their methylation level. >> Could you please give me some advices how can I use the UCSC to complish >> this aim? >> I have some liver methylation data, can I get other tissues, such as sperm >> etc., methylation data from the UCSC? >> I am very sorry that I made this kind of question because I am a beginner. >> Thank you for your reply. >> >> Best Wishes. >> >> Student. >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
