Hi Nicolas, The Table Browser would help you with this. To get to the Table Browser click on the "Tables" link on the blue navigation bar.
You will need to set the following clade, genome, assembly drop downs. You will need to also set the following: group: Genes and Gene Prediction Tracks track: Ensembl Genes table: ensGene region: position (put in the coordinates of the pseudogene and the area around it that you are interested in) output format: selected fields from primary and related tables output file: put in a fileName if you would like to save the output to your computer Click on "get output" Select the items that you would like to have displayed in your output. You will want to select "name" to output the ensembl id. Click on "get output". Hope this helps. Please don't hesitate to contact the mailing list again if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Nicholas Price" <[email protected]> To: [email protected] Sent: Tuesday, September 14, 2010 11:23:35 AM GMT -08:00 US/Canada Pacific Subject: [Genome] Question Hi, I have the coordinates of a pseudogene and I want to locate the genes on either side of the pseudogene. As output I will like the ensembl gene IDs Thanks you Nicholas -- The oppressed become the oppressors Paulo Freire (1921-1997) _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
