Hi Joshua, The easiest way to download all the CpG Islands with their coordinates and names is to use the table browser (http://genome.ucsc.edu/cgi-bin/hgTables). First, select the clade, genome and assembly of interest. Next, select "Regulation" from the group pull-down menu and "CpG Islands" from the track pull-down menu. Select "selected fields from primary and related tables" as the output format, enter a name for the output file if you would like (leave blank to keep output in browser), and click "get output". Select the "chrom", "chromStart", "chromEnd" and "name" check boxes and click "get output".
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 9/27/10 9:07 PM, qcshare wrote: > Dear Professor, > I want to download the genome CpG islands information, such as the number of > chromosome, start/end position of the CpG islands and CpG islands ID > numbers, I just found the first three items, but I can not found the > information of CpG islands ID numbers. > Could you please tell me where can I get this information? > > Thank you very much! > > Your Sincerely! > > Joshua. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
