> > Hello, > > I want to download exons and introns information from the UCSC, the format like this:
> Chr Gene name exon start position exon end positon > chr1 VDR 82938023 829387892 > chr2 COLIA1 78989087 78989298 > ..... > ..... > > Could you please tell me how can I download these information. > Thanks very much. > > Joshua. > > > > On Wed, Sep 29, 2010 at 1:36 AM, Mary Goldman <[email protected]> wrote: > >> Hi Joshua, >> >> The easiest way to download all the CpG Islands with their coordinates and >> names is to use the table browser ( >> http://genome.ucsc.edu/cgi-bin/hgTables). First, select the clade, genome >> and assembly of interest. Next, select "Regulation" from the group pull-down >> menu and "CpG Islands" from the track pull-down menu. Select "selected >> fields from primary and related tables" as the output format, enter a name >> for the output file if you would like (leave blank to keep output in >> browser), and click "get output". Select the "chrom", "chromStart", >> "chromEnd" and "name" check boxes and click "get output". >> >> I hope this information is helpful. Please feel free to contact the mail >> list again if you require further assistance. >> >> Best, >> Mary >> ------------------ >> Mary Goldman >> UCSC Bioinformatics Group >> >> >> On 9/27/10 9:07 PM, qcshare wrote: >> >>> Dear Professor, >>> I want to download the genome CpG islands information, such as the number >>> of >>> chromosome, start/end position of the CpG islands and CpG islands ID >>> numbers, I just found the first three items, but I can not found the >>> information of CpG islands ID numbers. >>> Could you please tell me where can I get this information? >>> >>> Thank you very much! >>> >>> Your Sincerely! >>> >>> Joshua. >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >>> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
