Hello Mary, Thanks for the reply. I have imported all the tables of hg19 and hgFixed into MySQL database, and I do have all minimum set of tables required. Accordingly, it could be because of the gbdb files. Based on the steps of installation manual on the UCSC genome browser, I don't see how to install gbdb files. I do find gbDbLoadStep under one of the folders under kent. (see attached image) Should I "make install it" and move it to cgi-bin or somewhere else?
Thank you. Bests, Woody 2010/10/27 Mary Goldman <[email protected]> > Hi Woody, > > Our best guess is that you are either missing key tables (see below), your > trackDb table is not up-to-date or your gbdb files are out of sync with your > MySQL tables. We recommend re-downloading the minimum set of tables required > for the Genome Browser ( > http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation). > > I hope this information is helpful. Please feel free to contact the mail > list again if you require further assistance. > > Best, > Mary > ------------------ > Mary Goldman > UCSC Bioinformatics Group > > ----- Original Message ----- > From: "Woody Lin" <[email protected]> > To: [email protected] > Sent: Tuesday, October 26, 2010 3:37:54 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Question about installing genome browser (error: > wgEncodeGisDnaPet) > > Dear all, > > I tried to install genome browser (hg19) on my computer, but I came upon > the > error message as following and found no solutions on the internet or genome > browser mailing list. > > Parent track wgEncodeGisDnaPet of child wgEncodeGisDnaPetViewAlignments > doesn't exist > > Could someone help me how to deal with the problem? Thank you so much! > > Bests, > Woody > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome >
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