Dear Hiram,
It looks like you are using hgsql instead of mysql, so I changed hgsql to
mysql and got the following messages:
*My-Server:*trackDb admin$ mysql -u root -p -e "select count(*) from
trackDb;" hg19
Enter password:
+----------+
| count(*) |
+----------+
| 134 |
+----------+
*My-Server:*trackDb admin$ make GIT=echo EXTRA=-strict DBS=hg19 alpha
find . -type l -exec rm {} \;
echo pull
pull
./loadTracks -release=alpha trackDb hgFindSpec hg19
./loadTracks: line 58: hgsql: command not found
Note: database hg19 does not exist, skipping
./checkMetaDb alpha metaDb hg19
./checkMetaDb: line 22: hgsql: command not found
Note: database hg19 does not exist, skipping
Woody
2010/11/2 Hiram Clawson <[email protected]>
> Good Morning Woody:
>
> Please try this command in your source tree directory
> src/hg/makeDb/trackDb/
>
> $ hgsql -e "select count(*) from trackDb;" hg19
> $ make GIT=echo EXTRA=-strict DBS=hg19 alpha
> $ hgsql -e "select count(*) from trackDb;" hg19
>
> This load of the trackDb table with the -strict argument
> will load only tracks that actually have tables in your hg19 database.
> You should note the count of entries in the trackDb table will be
> lower after the 'make' command.
>
> --Hiram
>
>
> Woody Lin wrote:
>
>> By the way, currently, I have only imported two databases "hg19" and
>> "hgFixed". (all tables are imported)
>> Do I need extra databases?
>>
>
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