Hi Laura, The paste list feature is for only identifiers or accessions in the name field of the currently selected table, refLink. You will need to create a filter.
To do this: 1) click on "create" next to filter: 2) Set locusLinkID is to "=" 3) In the box next to the locusLinkID input the locus link identifier (Unfortunately, you can only do it one identifier at a time). 4) Click on "submit". For more information on the filter option, please take a look at: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html#Filter If you have further questions, please contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Laura Cox" <[email protected]> To: [email protected] Sent: Thursday, December 2, 2010 9:19:22 AM GMT -08:00 US/Canada Pacific Subject: [Genome] Cow locuslink ID question I have a list of cow locuslink IDs and would like to retrieve the RefSeq gene IDs using the table browser. I see that the RefLink table schema inlcudes the locuslink ID. In the table browser I've selected - genome: cow; assembly: Oct 2007; group: Genes and Gene prediction tracks; track: RefSeq Genes; Table: refLink. However, when I use the locuslink ID in the "paste list" form I get an error message stating "given identifiers (e.g. 282714) have no match in table refLink, field name or in field name." How do I retrieve RefSeq IDs using the locuslink ID? Thanks, Laura Cox * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Laura A. Cox, Ph.D. Associate Scientist, Department of Genetics Core Scientist, Southwest National Primate Research Center Southwest Foundation for Biomedical Research 7620 NW Loop 410 San Antonio, TX 78245 T: 210-258-9687 F: 210-258-9600 website: http://www.sfbr.org/Departments/genetics_staff_bio.aspx?u=35 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
