I am trying to get the consensus sequences of the mouse repeats annotated in the RepeatMasker track for assembly mm9. Origionally I just downloaded the most recent set of mouse repeat consensus sequences from RepBase, but the names by and large don't match up with those in the RepeatMasker track. I then tried downloading the RepeatMasker database and using the queryRepeatDatabase.pl utility provided with RepeatMasker, but it only returned a list of simple repeat names, and even these did not include the actual sequences. Where can I go to get the consensus sequences of the repeats annotated in the RepeatMasker mm9 track?
Thanks for your help _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
