Hi Kevin, Has your myTest.bam file (bigDataUrl) been removed since you wrote the email? I tested its existence with the command "wget --spider http://www.microarray.fr/data/public/tmp/myTest.bam":
Spider mode enabled. Check if remote file exists. --2011-02-09 08:58:34-- http://www.microarray.fr/data/public/tmp/myTest.bam Resolving www.microarray.fr... 134.59.171.200 Connecting to www.microarray.fr|134.59.171.200|:80... connected. HTTP request sent, awaiting response... 404 Not Found Remote file does not exist -- broken link!!! Please write back to [email protected] when the file is restored, and hopefully we'll be able to resolve the issue. Angie ----- "Kevin LEBRIGAND" <[email protected]> wrote: > From: "Kevin LEBRIGAND" <[email protected]> > To: "genome" <[email protected]> > Sent: Wednesday, February 9, 2011 2:57:54 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] BAM file visualisation > > Hello, > I try to visualize .bam file into UCSC server with custom tracks. > .bam file are stored with .bam.bai directly on my web server but i'm > not abble to see anything in UCSC server (empty track). > I can't see also bamExample.bam when i upload it with .bai onto my > server. > > Is there apache configuration issues to be abble to do that ? > apache access.log is: > 128.114.119.131 - - [09/Feb/2011:11:50:41 +0100] "GET > /data/public/tmp/myTest.bam HTTP/1.0" 200 152281290 "-" > "genome.ucsc.edu/net.c" > > Here is the custom track i've used to see one of my .bam files (.bai > in the same directory). > track type=bam name="BAM Example One" db=mm9 visibility=dense > bigDataUrl=http://www.microarray.fr/data/public/tmp/myTest.bam > > thanks for your help, > kevin. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
