Sorry for that. I've restored the file here is the custom track i paste in UCSC custom tracks: track type=bam name="myTest" description="miRNAs hg19" db=hg19 visibility=pack bigDataUrl=http://www.microarray.fr/data/public/tmp/myTest.bam browser position chr17:57,918,627-57,918,698
Samtools view at this position returns 142322 reads but i see nothing in UCSC web browser. I've a second question maybe from the same issue: i've tryed to visualize .bw file generated from my .bam file as follow: $> genomeCoverageBed -bg -ibam myTest.bam -g hg19.chrsize > myTest.bedGraph $> bedGraphToBigWig myTest.bedGraph hg19.chrsize myTest.bw UCSC custom tracks: track name="Wiggle Track" type=bigWig bigDataUrl=http://myserver.edu/sample.bw I got an error: http://www.microarray.fr/data/public/tmp/myTest.bw is not a chromosome id r-tree index file thanks angie for your help. best kevin. Kevin LEBRIGAND 2011-02-09 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
