Hello, Yes, you are correct. All coordinates for all fields in the refGene file are 0-based start and 1-based end, including the transcript, CDS and exons.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 2/8/11 7:05 AM, Ȳ¿ìâ wrote: > I read a FAQ about 0-based start coordinates and 1-based end coordinates in > refGene file. > There are start and end coordinates for transcript, CDS, and exons in > refGene file. > Do start coordinates of all of these three items using the same stragtegy? > I mean the start coordinates of transcirpt, CDS, and exons are using 0-based > coordinates and the end coordinates of these are using 1-bsed coordinates? > > Thanks. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
