Hi Adam, There file you are looking for is located in our downloads here: http://hgdownload.cse.ucsc.edu/goldenPath/panTro2/vsHg18/panTro2.hg18.net.gz. You can then use the netToBed program in our utilities to convert this file into a BED file. Our source tree can be found here: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip and information about building our utilities can be found here: http://genome.ucsc.edu/admin/jk-install.html.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 2/8/11 11:31 AM, Adam Auton wrote: > Hello, > > In the chimpanzee PanTro2 database, there is a table which provides 'net' > alignment liftover co-ordinates in BED format (specifically, the netHg19 > table). I was wondering if such a table exists for the mappings from PanTro2 > to hg18? Alternatively, is there a method for converting the original > liftover net files into their BED file equivalents so that I could do the > conversion myself? > > Many thanks in advance, > > Adam > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
