This is exactly the information I needed. Thank-you so much for your help. Adam
On 9 February 2011 16:46, Mary Goldman <[email protected]> wrote: > Hi Adam, > > There file you are looking for is located in our downloads here: > http://hgdownload.cse.ucsc.edu/goldenPath/panTro2/vsHg18/panTro2.hg18.net.gz. > You can then use the netToBed program in our utilities to convert this file > into a BED file. Our source tree can be found here: > http://hgdownload.cse.ucsc.edu/admin/jksrc.zip and information about > building our utilities can be found here: > http://genome.ucsc.edu/admin/jk-install.html. > > I hope this information is helpful. Please feel free to contact the mail > list again if you require further assistance. > > Best, > Mary > ------------------ > Mary Goldman > UCSC Bioinformatics Group > > > On 2/8/11 11:31 AM, Adam Auton wrote: > >> Hello, >> >> In the chimpanzee PanTro2 database, there is a table which provides 'net' >> alignment liftover co-ordinates in BED format (specifically, the netHg19 >> table). I was wondering if such a table exists for the mappings from >> PanTro2 >> to hg18? Alternatively, is there a method for converting the original >> liftover net files into their BED file equivalents so that I could do the >> conversion myself? >> >> Many thanks in advance, >> >> Adam >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > -- Adam Auton Post-Doctoral Research Scientist, Wellcome Trust Centre for Human Genetics, University of Oxford Roosevelt Drive Oxford OX3 7BN UK _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
