Hi Chen, I believe the "fishbone" you are talking about are the intron arrows. These arrows do not display when any track is in dense - they are only visible in squish, pack and full. I hope this information addressed your question and was helpful. Please feel free to contact the mail list again if you require further assistance.
Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 2/15/11 11:37 AM, Hao Chen wrote: > Hi, > > I am trying to set a mirror of UCSC browser here with Maize genome. > > fasta and GFF format files are used.. > > and then I modified trackDb.ra by adding a track: > > track Genes > shortLabel Maize > longLabel Maize_5a_Nov_2010 > group genes > priority 392 > visibility dense > color 120,10,130 > type genePred refPred refMrna > idXref refLink mrnaAcc name > baseColorUseCds given > baseColorDefault genomicCodons > exonArrows on > > Everything works fine except that I can not see the "fishbone" when I am > browsing in dense visibility..There are just thin and thick blocks.. > Is there some setting about intron that I didn't notice? > I was trying to find the solution from reading README file and searching > on-line..but failed. > > Any help would be appreciated. > > Best, > Chen Hao > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
