---------- Forwarded message ---------- From: Hao Chen <[email protected]> Date: Wed, Feb 16, 2011 at 10:10 AM Subject: Re: [Genome] how could I get the "fishbone" from trackDb.ra setting? To: Mary Goldman <[email protected]>
Hi there, Thanks for your reply anyway but... http://genome.ucsc.edu do have what I mean "fishbone" in dense track.. sorry about the description which made more work... Here is two attachment of pictures.. One is what I mean "fishbone" and the other is the mirror genome browser I set up.. Hopefully it helps :) Best, Chen Hao On Tue, Feb 15, 2011 at 3:12 PM, Mary Goldman <[email protected]> wrote: > Hi Chen, > > I believe the "fishbone" you are talking about are the intron arrows. These > arrows do not display when any track is in dense - they are only visible in > squish, pack and full. I hope this information addressed your question and > was helpful. Please feel free to contact the mail list again if you require > further assistance. > > Best, > Mary > ------------------ > Mary Goldman > UCSC Bioinformatics Group > > > On 2/15/11 11:37 AM, Hao Chen wrote: > >> Hi, >> >> I am trying to set a mirror of UCSC browser here with Maize genome. >> >> fasta and GFF format files are used.. >> >> and then I modified trackDb.ra by adding a track: >> >> track Genes >> shortLabel Maize >> longLabel Maize_5a_Nov_2010 >> group genes >> priority 392 >> visibility dense >> color 120,10,130 >> type genePred refPred refMrna >> idXref refLink mrnaAcc name >> baseColorUseCds given >> baseColorDefault genomicCodons >> exonArrows on >> >> Everything works fine except that I can not see the "fishbone" when I am >> browsing in dense visibility..There are just thin and thick blocks.. >> Is there some setting about intron that I didn't notice? >> I was trying to find the solution from reading README file and searching >> on-line..but failed. >> >> Any help would be appreciated. >> >> Best, >> Chen Hao >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >
_______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
