Hi Katrina, This is good to know. Would you please also let me know how access the latest knowngene table throught mysql query?
On Mon, Apr 4, 2011 at 1:29 PM, Katrina Learned <[email protected]> wrote: > Hi Peng, > > The UCSC Genes track on mm9 is fairly old (last updated in September of > 2007), and we are actively working on an updated > version of the mm9 UCSC Genes track, which can be previewed here: > http://genome-preview.ucsc.edu/ > > On the preview browser, if you open UCSC Genes (which will be the new > version of the track) and go to the location of Mpg, you'll see that the > negative strand transcript that was previously labeled as Mpg, is now being > labeled as Nprl3, which is consistent with RefSeq. One of its alternate > names listed is Mare. This updated version of the UCSC Genes track on mm9 > should have many improvements of this kind. > > Please contact the mail list ([email protected]) again if you have any > further questions. > > Katrina Learned > UCSC Genome Bioinformatics Group > > Peng Yu wrote, On 04/01/11 02:55: >> >> Hi, >> >> I find an error in mm9 knownGene. Mpg and Mare are at the same locus. >> 2 Mpg genes are on the '+' strand and 1 Mpg gene is on the '-' strand. >> However, the one on the '-' strand to be Mare rather than Mpg. I think >> that there may be other errors like this in knownGene. This makes me >> wonder how gene names are assigned to the knownGenes and why such >> error occurs. >> >> > -- Regards, Peng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
