Hello Dennis, The 5.2 build isn't exactly a new assembly but does include UMD 3.1. We do plan to build a browser for UMD 3.1 and a dbSNP b133 track.
Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 03/29/11 23:18, Seong-yeon Lee wrote: > To whom this may concern, > > Hello, I am a student studying genomics about cow for the present in Korea. > > Recently NCBI began to offer the sequence maps for Bos taurus NCBI build 5.2 > which include the reference assembly Btau_4.2 and an alternate assembly > UMD_3.1. > However, UCSC genome browser doesn't support it yet but upto Btau_4.0. > We want to manipulate the dbSNP build 133 data of cow, the most recent one, > but it is based on build 5.2. > > Because of the fact above, we courteously ask you for cow data build 5.2. > Especially we need FASTA & GTF files of it. > If you have a plan to provide Bos taurus genome build 5.2, when would it be? > > Thank you in advance for your consideration. > > Yours truly, > Dennis Lee > --------------------------------------- > Seong-Yeon Lee > Graduate Student > Laboratory of Genomics & Genomic Medicine > Lee Gil Ya Cancer and Diabetes Institute > Gachon University of Medicine and Science > > Tel : +82 32 899 6545 > Fax : +82 32 899 6519 > Mobile : +82 10 7530 7004 > e-mail : [email protected] > --------------------------------------- > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
