Hi Rahil, I'll make the detail miRNA target interactions (MTIs) list including official gene symbol and Entrez gene ID in the miRTarBase release 2.4 on April 15. About new 400 MTIs will added in release 2.4 besides the target gene information.
Best Regards, Ken Sheng-Da Hsu, Ph.D. Candidate Integrative Systems Biology Laboratory, Institute of Bioinformatics and Systems Biology, National Chiao Tung University, HsinChu, Taiwan On Fri, Apr 8, 2011 at 3:38 AM, <[email protected]> wrote: > Hello, > > I dowloaded the list of experimentally known miRNA targets from your > website. The target genes that you mentioned in your file are gene > symbols. I was trying to find if any of my list of human genes are present > in the file by matching the gene symbols, but then I noticed that some of > the gene symbols for human are not mentioned according to human gene > symbols. For example: > C-myc, Caspase-3, dicer, Tcl1 etc. > For some I look into NCBI to see their actual human gene symbols. For the > above examples their names should have heen: > MYC for C-myc, CASP3 for Caspase-3, DICER1 for dicer and for Tcl1 I can't > even say whether its TCL1A or TCL1B, despite that the table state for them > Species "Homo sapiens" > For few genes I would have done it manually, but I have a long list of > human Gene symbols downloaded from UCSC Genome Browser to compare. > > Please provide me with the correct gene symbols at least for human target > genes. > > To UCSC: I hope all the gene names that are mentioned in your refGene.txt > file are the correct gene symbols according to HGNC guidelines at least > for human. > > Thank you, > Rahil Sethi > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
