I'm interested in using the ENCODE/Broad Institute Histone Modification ChIP-seq data available on the UCSC Genome Browser. I am generally familiar with BED files but the actual value provided for each span is not included in the file header.
This question was asked at http://www.mail-archive.com/[email protected]/msg04256.html but the responsive link is now broken. I assume that it is a mean log2 fold enrichment over the span, but I'd like a more definitive response. Also is there a straightforward way to get the fold enrichment at each position (or at least smaller region, on the order of 1-10 bases). Many Thanks! Brad Gulko [email protected] (former Banana Slug / Haussler lab alum from 1994, now working for Adam Siepel at Cornell). _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
