Hi Brad, Sorry for the delayed response. The link you need is http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
If you scroll down there, click on the schema links on the right. I think the information there will answer your question. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 6/13/11 4:10 PM, Brad Gulko wrote: > I'm interested in using the ENCODE/Broad Institute Histone Modification > ChIP-seq data available on the UCSC Genome Browser. I am generally > familiar with BED files but the actual value provided for each span is > not included in the file header. > > This question was asked at > > http://www.mail-archive.com/[email protected]/msg04256.html > > but the responsive link is now broken. > > I assume that it is a mean log2 fold enrichment over the span, but I'd like > a more definitive response. Also is there a straightforward way > to get the fold enrichment at each position (or at least smaller region, on > the order of 1-10 bases). > > Many Thanks! > > Brad Gulko > [email protected] > (former Banana Slug / Haussler lab alum from 1994, now working > for Adam Siepel at Cornell). > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
