After downloading an executable, there are two things to do: #make executable:
chmod +x bedGraphToBigWig # "." is not on your path then to run it, use ./bedGraphToBigWig On 08/01/11 13:30, JINGJING JIN wrote: > Hi all, > > I have a problem when I try to convert the bedgraph into bigwig format. > > jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ > bedGraphToBigWig minus.bedGraph chrom.sizes minus_BigWig.bw > > bedGraphToBigWig: command not found > > I have download the bedGraphToBigWig in the same folder with the > dataset. However, I don't know why it can find it? > > In addition, my data in minus.bedGraph is like this: > > chr1 start1 end1 score1 > chr1 start2 end2 score2 > chr2 start1 end1 score1 > chr3 start1 end1 score1 > > The data in chrom.sizes is like this: > > chr1 size1 > chr2 size2 > chr3 size3 > > Can you give me some suggestions where is wrong? > > Thanks! > > jingjing > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
