It seems the system can't find this command. However, the download bedGraphToBigWig is in this file.
That is why I don't understand why it can't run? jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ $ file ./bedGraphToBigWig $: command not found jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ $ ldd ./bedGraphToBigWig $: command not found jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ ls all1.gff3 bedGraphToBigWig minus_all.txt all.gff3 bigWigToWig minus_bedgraph.bedGraph arabidopsis_all.fa chrom.sizes plus_all.txt arabidopsis_all.gff3 fetchChromSizes plus_bedgraph.bedGraph jingjing On Thu, Aug 4, 2011 at 4:33 PM, Hiram Clawson <[email protected]> wrote: > What does the 'file' command identify: > > $ file ./bedGraphToBigWig > > Can it find its dynamic libraries: > > $ ldd ./bedGraphToBigWig > > Where is your bedGraphToBigWig command located ? > > JINGJING JIN wrote: >> >> Thanks. >> >> I have make it and find the jkweb.a file now. >> >> Can I use the the command now? >> >> Why it is still can't run? >> >> jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ >> ./bedGraphToBigWig minus_bedgraph.bedGraph chrom.sizes minus_BigWig.bw >> bash: ./bedGraphToBigWig: cannot execute binary file > -- Best Regards, JIN JINGJING School of Computing National University of Singapore Email: [email protected] [email protected] Phone: +65 83179646 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
