How did the file bedGraphToBigWig get into this directory ? And what is it ?
You may need some help with your shell commands: http://en.wikipedia.org/wiki/Unix_shell http://linuxcommand.org/learning_the_shell.php http://www.gnu.org/software/bash/manual/bashref.html --Hiram JINGJING JIN wrote: > It seems the system can't find this command. > However, the download bedGraphToBigWig is in this file. > > That is why I don't understand why it can't run? > > jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ $ file > ./bedGraphToBigWig > > $: command not found > jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ $ ldd > ./bedGraphToBigWig > > $: command not found > > jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ ls > all1.gff3 bedGraphToBigWig minus_all.txt > all.gff3 bigWigToWig minus_bedgraph.bedGraph > arabidopsis_all.fa chrom.sizes plus_all.txt > arabidopsis_all.gff3 fetchChromSizes plus_bedgraph.bedGraph _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
