Hi Varun, Load your genes and SNPs into Galaxy. Under Human Genome Variation there is a tool called aaChanges, that will compute the amino-acid changes.
Belinda On Mon, 22 Aug 2011, [email protected] wrote: > Hi Everyone > Thanks for all the help you people have been giving me. > > I have some questions. It would be vry nice of you guys if you help me out > in this. > > Since i am working on ribosomal protein genes in humans, i was able to > extract the snps which are genomic as well as coding(whether synonymous or > non synonymous) for each of the ribosomal genes(there are around 80 genes). > Now i want to know where in the amino acid seq the snp was present which > changed the amino acid sequence. > > For example previously it was Leucine at that position BUT now it is > Isoleucine. > > How can i get that. > > Hope to hear from you soon > > Regards > Varun > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
