Hi Varun, Unfortunately, we don't have the peptide position in our table. We suggest that you use the galaxy mailing list (http://wiki.g2.bx.psu.edu/Mailing%20Lists) to see if there is a way to accomplish what you would like to do.
If you have further questions about the genome browser, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: varun gupta <[email protected]> Date: Thu, Aug 25, 2011 at 10:55 AM Subject: Re: [Genome] Snp To: [email protected] Hi Everyone I have a question which might be a simple one for you guys So since i am working on ribosomal protein genes(around 80 in humans), i have managed to extract the snps at various locations in all those 80 genes. This snps are basically genomic in origin and they are coding. I will just show you guys the table. #bin chrom chromStart chromEnd name transcript frame alleleCount funcCodes alleles codons peptides mol_type class function 887 chr22 39708987 39708988 rs2014840 NM_000967 2 2 8,42, G,T, GGA,GTA, G,V, genomic single missense Now as you can see their is a change of peptide from G(glycine) -> V(valine) for snp rs2014840. What i am interested in is the fact that i need to find where this change is actually occurring in the peptide seq. In other words i want to know which Glycine(G) residue gets changed to Valine(V). I have a huge list of my genes and each genes have snps like these. It would be very nice of you to help me out in this.. Regards VARUN _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
