Hi Emon, Unfortunately we do not have any CpG Shelf tracks - just islands.
Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 6/25/12 11:04 AM, Emon Elboudwarej wrote: > Hello, > > I would like to just follow up on my question from last week. I looked at > the links that were provided to me and they mention how to find data that > is upstream or downstream from a CpG island, but not necessarily where the > definitions came from. Is there anything in your knowledge that the UCSC > browser refers to as a CpG shelf? Please let me know as soon as you get a > chance. Thanks again. > > Best, > Emon > > On Fri, Jun 22, 2012 at 10:38 AM, Luvina Guruvadoo <[email protected]>wrote: > >> Hi Emon, >> >> Please see the description page for our CpG Islands track: >> http://genome.ucsc.edu/cgi-**bin/hgTrackUi?db=hg19&g=**cpgIslandExt<http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=cpgIslandExt>. >> This previously answered question may also be useful: >> https://lists.soe.ucsc.edu/**pipermail/genome/2010-April/**021971.html<https://lists.soe.ucsc.edu/pipermail/genome/2010-April/021971.html> >> >> Feel free to contact us again at [email protected] if you have any >> further questions. >> >> --- >> Luvina Guruvadoo >> UCSC Genome Bioinformatics Group >> >> >> >> On 6/21/2012 3:59 PM, Emon Elboudwarej wrote: >> >>> Hello, >>> >>> My Name is Emon Elboudwarej, I am a researcher at the University of >>> California Berkeley. I conduct DNA methylation research and I have asked >>> the company Illumina as to how they define what a CpG shore and shelf are. >>> They have informed me that they get this information directly from the >>> UCSC >>> genome browser and I was wondering how you have gotten your definition for >>> a CpG island, shore, and shelf. Was this an arbitrary definition set by >>> you, or is there a specific source that you cite for this definition. Any >>> and all help is greatly appreciated. I want to make sure I am citing the >>> genome browser in my manuscript correctly. Thank you very much, and I hope >>> to hear from you soon. Take care. >>> >>> Best, >>> Emon Elboudwarej >>> ______________________________**_________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/**mailman/listinfo/genome<https://lists.soe.ucsc.edu/mailman/listinfo/genome> >>> >> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
