Good Afternoon Thomas: If your computer doesn't have a lot of memory, it would appear that it takes forever. Your system is probably swapping. The bedToBigBed converter requires a lot of memory to operate correctly. Note these measurements:
http://genomewiki.ucsc.edu/index.php/Big_file_converters --Hiram On 7/24/12 6:08 PM, Galt Barber wrote: > Hi, Thomas! > > You can send it to me: galt soe.ucsc.edu > > It won't receive attachments over 25MB. > If you can put it on some server and send me the URL, > that would be helpful. > > -Galt > > On Tue, Jul 24, 2012 at 5:47 AM, Thomas Blank<[email protected]>wrote: > >> Hello, >> >> I tried to convert a BED file into a bigBed file using the bedToBigBed >> executable from http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/, >> but bedToBigBed doesn't return a result it just keeps running. When >> using other input data it works fine. Can someone take a look at this? >> (To whom shall I send the input BED file? Sending it to the mailing list >> wouldn't work, would it?) >> >> Regards, >> >> -- >> Thomas Blank >> Genomatix Software GmbH >> Bayerstr. 85a >> 80335 Muenchen/Germany >> phone: +49 89 599766-0 >> http://www.genomatix.de >> Legal information: HRB 117956, Amtsgericht Muenchen; Tax-ID: DE 189568720 >> Managing Directors: Dr. Matthias Scherf (COO), Dr. Martin Seifert (CEO) >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
