Hi, Thomas! You have indeed uncovered a little bug and we shall have a fix soon.
Thank you very much for reporting it! -Galt On Wed, Jul 25, 2012 at 2:02 AM, Thomas Blank <[email protected]>wrote: > Hi Galt, > > the input file I have troubles with is actually quite small, only 5.1K. > It's attached. > The thing is, when I delete the last region from the file then it works, > but I can't see anything wrong with the last region and bedToBigBed doesn't > complain either, it just keeps running. (command: ./bedToBigBed > infinite_loop.bed hsa_chromosome_sizes.txt out.bb) > > Regards, > > Thomas > > > Am 25.07.2012 03:08, schrieb Galt Barber: > > Hi, Thomas! > > You can send it to me: galt soe.ucsc.edu > > It won't receive attachments over 25MB. > If you can put it on some server and send me the URL, > that would be helpful. > > -Galt > > On Tue, Jul 24, 2012 at 5:47 AM, Thomas Blank > <[email protected]>wrote: > >> Hello, >> >> I tried to convert a BED file into a bigBed file using the bedToBigBed >> executable from http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/, >> but bedToBigBed doesn't return a result it just keeps running. When >> using other input data it works fine. Can someone take a look at this? >> (To whom shall I send the input BED file? Sending it to the mailing list >> wouldn't work, would it?) >> >> Regards, >> >> -- >> Thomas Blank >> Genomatix Software GmbH >> Bayerstr. 85a >> 80335 Muenchen/Germany >> phone: +49 89 599766-0 <%2B49%2089%20599766-0> >> http://www.genomatix.de >> Legal information: HRB 117956, Amtsgericht Muenchen; Tax-ID: DE 189568720 >> Managing Directors: Dr. Matthias Scherf (COO), Dr. Martin Seifert (CEO) >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > > > > -- > Thomas Blank > Genomatix Software GmbH > Bayerstr. 85a > 80335 Muenchen/Germany > phone: +49 89 599766-0http://www.genomatix.de > Legal information: HRB 117956, Amtsgericht Muenchen; Tax-ID: DE 189568720 > Managing Directors: Dr. Matthias Scherf (COO), Dr. Martin Seifert (CEO) > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
