Hi Thomas, Galt will be in touch with you when the fix is available.
-- Brooke Rhead UCSC Genome Bioinformatics Group On 7/27/12 9:00 AM, Thomas Blank wrote: > Hi Galt, > > thank you for fixing it :-). > In case that the fixed version of bedToBigBed won't be put on > http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ in the near > future, could you send it to me as soon as it is available? > > Thomas > > > Am 27.07.2012 01:42, schrieb Galt Barber: >> Hi, Thomas! >> >> You have indeed uncovered a little bug and we shall have a fix soon. >> >> Thank you very much for reporting it! >> >> -Galt >> >> On Wed, Jul 25, 2012 at 2:02 AM, Thomas Blank >> <[email protected] <mailto:[email protected]>> wrote: >> >> Hi Galt, >> >> the input file I have troubles with is actually quite small, only >> 5.1K. It's attached. >> The thing is, when I delete the last region from the file then it >> works, but I can't see anything wrong with the last region and >> bedToBigBed doesn't complain either, it just keeps running. >> (command: ./bedToBigBed infinite_loop.bed hsa_chromosome_sizes.txt >> out.bb <http://out.bb>) >> >> Regards, >> >> Thomas >> >> >> Am 25.07.2012 03 <tel:25.07.2012%2003>:08, schrieb Galt Barber: >>> Hi, Thomas! >>> >>> You can send it to me: galt soe.ucsc.edu <http://soe.ucsc.edu> >>> >>> It won't receive attachments over 25MB. >>> If you can put it on some server and send me the URL, >>> that would be helpful. >>> >>> -Galt >>> >>> On Tue, Jul 24, 2012 at 5:47 AM, Thomas Blank >>> <[email protected] <mailto:[email protected]>> wrote: >>> >>> Hello, >>> >>> I tried to convert a BED file into a bigBed file using the >>> bedToBigBed >>> executable from >>> http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/, >>> but bedToBigBed doesn't return a result it just keeps >>> running. When >>> using other input data it works fine. Can someone take a look >>> at this? >>> (To whom shall I send the input BED file? Sending it to the >>> mailing list >>> wouldn't work, would it?) >>> >>> Regards, >>> >>> -- >>> Thomas Blank >>> Genomatix Software GmbH >>> Bayerstr. 85a >>> 80335 Muenchen/Germany >>> phone: +49 89 599766-0 <tel:%2B49%2089%20599766-0> >>> http://www.genomatix.de >>> Legal information: HRB 117956, Amtsgericht Muenchen; Tax-ID: >>> DE 189568720 >>> Managing Directors: Dr. Matthias Scherf (COO), Dr. Martin >>> Seifert (CEO) >>> >>> _______________________________________________ >>> Genome maillist - [email protected] >>> <mailto:[email protected]> >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >>> >> >> >> -- >> Thomas Blank >> Genomatix Software GmbH >> Bayerstr. 85a >> 80335 Muenchen/Germany >> phone:+49 89 599766-0 <tel:%2B49%2089%20599766-0> >> http://www.genomatix.de >> Legal information: HRB 117956, Amtsgericht Muenchen; Tax-ID: DE >> 189568720 >> Managing Directors: Dr. Matthias Scherf (COO), Dr. Martin Seifert (CEO) >> >> > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
