Hi Alessandro,

Please refer to the following documentation for more information on how 
these assemblies were aligned:
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsGorGor3/

Feel free to contact us again at [email protected] if you have any 
further questions.

---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group


On 7/26/2012 4:43 AM, Alessandro Testori wrote:
> Greetings. I'm trying to align the human genome to the gorilla genome. I
> run lastz comparing each chromosome of the human genome with each
> chromosome of the gorilla genome. I then want to reconstruct the alignments
> which are available at
>
> http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsGorGor3/axtNet/
>
> but I don't get exactly the same results. Can you please explain me how I
> should exactly proceed?
>
> Thank you,
>
> with kind regards.
>
> Alessandro Testori,
> PhD student, Torino University (Italy)
>

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