I am seeing the following when bootstrapping on CentOS 5.5 and trying `emerge
-u system`.
===
...
/usr/include/bits/string3.h:160: multiple definition of `stpncpy'
.libs/backtrace.o:/usr/include/bits/string3.h:160: first defined here
.libs/in_unpack_generic.o: In function `wcstombs':
/usr/include/bits/stdlib.h:114: multiple definition of `wcstombs'
.libs/backtrace.o:/usr/include/bits/stdlib.h:114: first defined here
.libs/in_unpack_generic.o: In function `mbstowcs':
/usr/include/bits/stdlib.h:95: multiple definition of `mbstowcs'
.libs/backtrace.o:/usr/include/bits/stdlib.h:95: first defined here
.libs/in_unpack_generic.o: In function `wctomb':
/usr/include/bits/stdlib.h:74: multiple definition of `wctomb'
.libs/backtrace.o:/usr/include/bits/stdlib.h:74: first defined here
.libs/in_unpack_generic.o: In function `ptsname_r':
/usr/include/bits/stdlib.h:53: multiple definition of `ptsname_r'
.libs/backtrace.o:/usr/include/bits/stdlib.h:53: first defined here
.libs/in_unpack_generic.o: In function `realpath':
/usr/include/bits/stdlib.h:37: multiple definition of `realpath'
.libs/backtrace.o:/usr/include/bits/stdlib.h:37: first defined here
.libs/in_unpack_generic.o: In function `fgets_unlocked':
/usr/include/bits/stdio2.h:125: multiple definition of `fgets_unlocked'
.libs/backtrace.o:/usr/include/bits/stdio2.h:125: first defined here
.libs/in_unpack_generic.o: In function `fgets':
/usr/include/bits/stdio2.h:109: multiple definition of `fgets'
.libs/backtrace.o:/usr/include/bits/stdio2.h:109: first defined here
.libs/in_unpack_generic.o: In function `gets':
/usr/include/bits/stdio2.h:94: multiple definition of `gets'
.libs/backtrace.o:/usr/include/bits/stdio2.h:94: first defined here
collect2: ld returned 1 exit status
make[3]: *** [libgfortran.la] Error 1make[3]: Leaving directory
`/home/egeland/gentoo-prefix/var/tmp/portage/sys-deve
l/gcc-4.4.4-r2/work/build/x86_64-pc-linux-gnu/libgfortran'
make[2]: *** [all] Error 2make[2]: Leaving directory
`/home/egeland/gentoo-prefix/var/tmp/portage/sys-deve
l/gcc-4.4.4-r2/work/build/x86_64-pc-linux-gnu/libgfortran'
make[1]: *** [all-target-libgfortran] Error 2
make[1]: Leaving directory
`/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/work/build'
make: *** [bootstrap-lean] Error 2
emake failed
* ERROR: sys-devel/gcc-4.4.4-r2 failed (compile phase):
* emake failed with bootstrap-lean
*
* Call stack:
* ebuild.sh, line 62: Called call-ebuildshell 'src_compile'
* environment, line 766: Called src_compile
* environment, line 5048: Called gcc_src_compile
* environment, line 3159: Called gcc_do_make
* environment, line 2930: Called die
* The specific snippet of code:
* emake LDFLAGS="${LDFLAGS}" STAGE1_CFLAGS="${STAGE1_CFLAGS}"
LIBPATH="${EPREFIX}${LIBPATH}" BOOT_CFLAGS="${BOOT_CFLAGS}" ${GCC_MAKE_TARGET}
|| die "emake failed with ${GCC_MAKE_TARGET}";
*
* If you need support, post the output of 'emerge --info
=sys-devel/gcc-4.4.4-r2',
* the complete build log and the output of 'emerge -pqv
=sys-devel/gcc-4.4.4-r2'.
* The complete build log is located at
'/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/temp/build.log'.
* The ebuild environment file is located at
'/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/temp/environment'.
* S:
'/home/egeland/gentoo-prefix/var/tmp/portage/sys-devel/gcc-4.4.4-r2/work/build'
===
This appears to be a closed bug:
https://bugs.gentoo.org/show_bug.cgi?id=289757
Which was declared fixed with gcc-4.5.2-r00.1, but I observed the same thing
with that gcc version on my system.
My CentOS 5.5 base system does have multiple fortran-related packages already
installed.
Trying gcc-4.5.2-r00.1 again now with USE=vanilla to confirm the workaround.
Compiling...
See also
http://archives.gentoo.org/gentoo-alt/msg_45fe4ddd90a35ee1fb9b6f91f745d249.xml
===
% emerge --info \=sys-devel/gcc-4.4.4-r2
Portage 2.2.01.18252-prefix (prefix/linux/amd64, gcc-4.2.4, unavailable,
2.6.18-194.32.1.el5
x86_64)=================================================================
System
Settings=================================================================System
uname:
Linux-2.6.18-194.32.1.el5-x86_64-AMD_Phenom-tm-_II_X2_B55_Processor-with-redhat-5.5-FinalTimestamp
of tree: Thu, 12 May 2011 13:39:52 +0000app-shells/bash:
4.2_p8dev-lang/python: 2.7.1-r1sys-devel/autoconf: 2.68sys-devel/automake:
1.11.1sys-devel/binutils: 2.21.51.0.7 sys-devel/gcc: 4.2.4-r01.2
sys-devel/gcc-config: 1.4.1-r00.2sys-devel/libtool: 2.4-r1sys-devel/make:
3.82virtual/os-headers: 0Repositories: gentoo_prefixInstalled
sets:ACCEPT_KEYWORDS="~amd64-linux" ACCEPT_LICENSE="*
-@EULA"CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"CHOST="x86_64-pc-linux-gnu"CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/portage /etc/terminfo"
CXXFLAGS="-O2
-pipe"DISTDIR="/home/egeland/gentoo-prefix/usr/portage/distfiles"FEATURES="assume-digests
binpkg-logs collision-protect distlocks fixlafiles fixp
ackages news parallel-fetch preserve-libs protect-owned sfperms strict
unknown-features-warn unmerge-logs unmerge-orphans userfetch"FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org";
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1"
PKGDIR="/home/egeland/gentoo-prefix/usr/portage/packages"
PORTAGE_CONFIGROOT="/home/egeland/gentoo-prefix/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --stats --timeout=180 --exclude=/distfiles
--exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/home/egeland/gentoo-prefix/var/tmp"
PORTDIR="/home/egeland/gentoo-prefix/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix"
USE="amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx
modules mudflap ncurses nls nptl nptlonly openmp pcre perl pppd prefix python
readline session sse sse2 ssl sysfs tcpd unicode xorg zlib" ALSA_CARDS="ali5451
als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938
es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx
via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop
empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul
mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions
alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file
authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user
autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires
ext_filter file_cache filter headers include info log_config logio mem_cache
mime mime_magic negotiation rewrite setenvif speling status unique_id userdir
usertrack vhost_alias" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load
memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm
earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip
navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing
tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses
text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU"
VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon
savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd
pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee
tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS,
MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS,
PORTAGE_RSYNC_EXTRA_OPTS
===
