Hi Mustafa, Are you using the memory (ie, flat file) adaptor? If so, just about anything will be orders of magnitude faster. As it happens, I wrote a wiki page about this very topic a few weeks ago:
http://www.gmod.org/wiki/index.php/GBrowse_adaptors Scott On Wed, 2008-01-30 at 23:24 -0800, Syed Mustafa Hussain wrote: > Greetings, > > I am trying to integrate and view various regulators > for an organism. I am currently using Bio::DB::GFF > database adaptor. GFF data files from some sources > exceed 30Mb which makes browser very slow. > > I need to know how various database adaptors perform > with Gbrowse. Gbrowse users using other adaptors > please comment. > > Is there a way to index such big GFF files to make > Gbrowse perform better? > > Thanks, > Mustafa. > > > > ____________________________________________________________________________________ > Never miss a thing. Make Yahoo your home page. > http://www.yahoo.com/r/hs > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Gmod-gbrowse mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse -- ------------------------------------------------------------------------ Scott Cain, Ph. D. [EMAIL PROTECTED] GMOD Coordinator (http://www.gmod.org/) 216-392-3087 Cold Spring Harbor Laboratory ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
