Hi Lincoln, yep it's fixed step - that's why i'm so surprised it's taking so long.
sean. >Hi Sean, >What format are you using to load the wig data? If you are using BED format >it will take forever. If you use variable or fixed step, then the whole >genome should complete in a few hours. >Lincoln On Feb 19, 2008 7:33 AM, Sean O'Keeffe <[EMAIL PROTECTED]> wrote: > Hi all, > I'm currently tasked with displaying phastCons data in Gbrowse. I'm > using Bio::Graphics::Wiggle::Loader to load each data set (chromosome.pp > file). Has anyone done this before or give me an estimate on the time > needed? I started on Friday evening with chr1.pp and it's still loading > the *.wig file. > chr1.pp is ~1.4GB in size as is chr2.pp but the chromosome size gets > progessively smaller. I've got this this job running on a 6ghz dual core > linux with 4gb of memory. > > Thanks, > Sean. ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Gmod-gbrowse mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
