Hi Jason,
If you do a CVS update you'll find sample files and a walkthrough in the
tutorial. If you tried this today after I worked on Sean's slow-loading
issue, there is a finite chance that I inadvertently broke something.
Lincoln
On Feb 20, 2008 3:40 PM, Jason Stajich <[EMAIL PROTECTED]> wrote:
> I've loaded a small file of phastcons results that I generated and I
> don't see any values in with the wiggle_xyplot and when I use the
> wiggle_density it is empty.
> Is there any way to debug that features that are loaded and available
> to the glyph?
>
> Are there example conf files stanzas for different wiggl data that
> can be put on the wiki?
>
> thanks,
> -jason
>
>
> On Feb 19, 2008, at 4:33 AM, Sean O'Keeffe wrote:
>
> > Hi all,
> > I'm currently tasked with displaying phastCons data in Gbrowse. I'm
> > using Bio::Graphics::Wiggle::Loader to load each data set
> > (chromosome.pp
> > file). Has anyone done this before or give me an estimate on the time
> > needed? I started on Friday evening with chr1.pp and it's still
> > loading
> > the *.wig file.
> > chr1.pp is ~1.4GB in size as is chr2.pp but the chromosome size gets
> > progessively smaller. I've got this this job running on a 6ghz dual
> > core
> > linux with 4gb of memory.
> >
> > Thanks,
> > Sean.
> >
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>
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Lincoln D. Stein
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