Hi,
First, since this is an FFTW-related issue you will probably get
better help by asking the FFTW authors.
Looking in config.log, the script is trying to preprocess the
test program
/* confdefs.h. */
#define PACKAGE_NAME "fftw"
#define PACKAGE_TARNAME "fftw"
#define PACKAGE_VERSION "3.1.2"
#define PACKAGE_STRING "fftw 3.1.2"
#define PACKAGE "fftw"
#define VERSION "3.1.2"
#define FFTW_SINGLE 1
#define BENCHFFT_SINGLE 1
/* end confdefs.h. */
#ifdef __STDC__
# include <limits.h>
#else
# include <assert.h>
#endif
using the command gcc -std=gnu99 -E conftest.c
but gets the error message
In file included from /usr/include/bits/posix1_lim.h:130,
from /usr/include/limits.h:144,
from
/usr/lib/gcc-lib/i386-redhat-linux/3.2.3/include/limits.h:132,
from
/usr/lib/gcc-lib/i386-redhat-linux/3.2.3/include/syslimits.h:7,
from
/usr/lib/gcc-lib/i386-redhat-linux/3.2.3/include/limits.h:11,
from conftest.c:13:
/usr/include/bits/local_lim.h:36:26: linux/limits.h: No such
file or directory
<limits.h> is mandatory for ANSI C99, so there is
something wrong with your operating system/compiler installation.
Cheers,
Erik
On Oct 17, 2006, at 1:43 PM, sharada wrote:
Hi gromacs users,
I am trying to install gromacs on Linux. While installing the fftw
module , I am getting the following error
at the ./configure stage:
[EMAIL PROTECTED] fftw-3.1.2]#
./configure --enable-float --enable-threads --enable-sse
checking for a
BSD-compatible install... /usr/bin/install -c
checking whether build
environment is sane... yes
checking for gawk... gawk
checking whether make sets
$(MAKE)... yes
checking whether to enable
maintainer-specific portions of Makefiles... no
checking build system
type... i686-pc-linux-gnu
checking host system
type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler
default output file name... a.out
checking whether the C
compiler works... yes
checking whether we are
cross compiling... no
checking for suffix of
executables...
checking for suffix of
object files... o
checking whether we are
using the GNU C compiler... yes
checking whether gcc
accepts -g... yes
checking for gcc option to
accept ISO C89... none needed
checking for style of
include used by make... GNU
checking dependency style
of gcc... gcc3
checking for C compiler
vendor... gnu
checking for gcc option to
accept ISO C99... -std=gnu99
checking for gcc -std=gnu99
option to accept ISO Standard C... (cached) -std=gnu99
checking for a
BSD-compatible install... /usr/bin/install -c
checking whether ln -s
works... yes
checking whether make sets
$(MAKE)... (cached) yes
checking for a sed that
does not truncate output... /bin/sed
checking for grep that
handles long lines and -e... /bin/grep
checking for egrep...
/bin/grep -E
checking for ld used by gcc
-std=gnu99... /usr/bin/ld
checking if the linker
(/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld
option to reload object files... -r
checking for BSD-compatible
nm... /usr/bin/nm -B
checking how to recognise
dependent libraries... pass_all
checking how to run the C
preprocessor... /lib/cpp
configure: error: C
preprocessor "/lib/cpp" fails sanity check
See `config.log' for more
details.
what does the error trying to tell me ? cpp is linked
to /usr/bin/cpp. I am installing from the root account. can any body
help ? I am attaching the config.log file alongwith. Thanks in
advance.
regards,
sharada
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