Martin Höfling a écrit :
Am Mittwoch, 27. Juni 2007 schrieb David van der Spoel:
So the submitted script was basically calling a python script, calling
the necessary tools to check output, and run the next step. This can be
cumbersome, if it comes to errorhandling (hardware failures etc.)
actually most queueing systems have support for chaining jobs, but if
your hardware fails you're out of luck of course.
Yep that's true with Sun Grid Engine, too. I originally thought about using
it, but job completition was not reliable. I should check the current status
when I set up the next runs, since this should not be the default
behavior. :-)
Best
Martin
Most of the time, you can rely on the return status of your SGE jobs
(i'm using SGE too).
For instance a correctly completed job returns "Exit Status = 0"
while a failed job returns (whatever the failure reason) 1 or 255 ...
This is a rough verification but in a first rapid approach, you can be
sure to not launch the next step if exit status !=0 :-)
Hope this helps,
Stéphane
--
Stéphane Téletchéa, PhD. http://www.steletch.org
Unité Mathématique Informatique et Génome http://migale.jouy.inra.fr/mig
INRA, Domaine de Vilvert Tél : (33) 134 652 891
78352 Jouy-en-Josas cedex, France Fax : (33) 134 652 901
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
