vivek sharma wrote:
Hi There,

I have few MD trajectory, I want to analyze them visually (other than ngmx option as it gives very few option). I tried for opening those trajectories in vmd and pymol but not able to view them. It shows me the trajectory loaded, but not viewing anything. Is there any check to be doen for viewing trajectory in these visualization tools ?

Or is it because of the size of the trajectory as I am having trajectories of around 10 nsec.

did you load a pdb file too?

Please suggest.

With Thanks,
Vivek


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