Hi,
Or even simpler, just from the command-line:
vmd conf.gro traj.trr
or
vmd conf.pdb traj.trr
Berk
Date: Tue, 14 Oct 2008 01:22:40 -0500
From: [EMAIL PROTECTED]
To: [email protected]
Subject: Re: [gmx-users] Unable to view trajectory in pymol or vmd
Hi,
In VMD:
1. Load the *.gro file
2. Load the *.trr file
See the Amber basic workshop - tutorial 2 for more ideas:
http://ambermd.org/tutorials/basic/tutorial2/
regards,
Carlos
2008/10/14 vivek sharma <[EMAIL PROTECTED]>
Hi There,
I have few MD trajectory, I want to analyze them visually (other than ngmx
option as it gives very few option).
I tried for opening those trajectories in vmd and pymol but not able to view
them. It shows me the trajectory loaded, but not viewing anything.
Is there any check to be doen for viewing trajectory in these visualization
tools ?
Or is it because of the size of the trajectory as I am having trajectories of
around 10 nsec.
Please suggest.
With Thanks,
Vivek
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
_________________________________________________________________
Express yourself instantly with MSN Messenger! Download today it's FREE!
http://messenger.msn.click-url.com/go/onm00200471ave/direct/01/
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
