vivek sharma wrote:
Hi David,
Thanks for your response.
I was not loading any pdb file. Do I need to do so ?
& where ?
previous poster just explained
in VMD load pdb then load traj.xtc or traj.trr
With Thanks,
Vivek
2008/10/14 David van der Spoel <[EMAIL PROTECTED]
<mailto:[EMAIL PROTECTED]>>
vivek sharma wrote:
Hi There,
I have few MD trajectory, I want to analyze them visually (other
than ngmx option as it gives very few option).
I tried for opening those trajectories in vmd and pymol but not
able to view them. It shows me the trajectory loaded, but not
viewing anything.
Is there any check to be doen for viewing trajectory in these
visualization tools ?
Or is it because of the size of the trajectory as I am having
trajectories of around 10 nsec.
did you load a pdb file too?
Please suggest.
With Thanks,
Vivek
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David van der Spoel, Ph.D., Professor of Biology
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David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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