HI Mark, thanks for your reply..... I have gone through the g_hbond -h, and have plotted hbnum.xvg using -num, which gives me the plot of the number of h_bonds with respect to time, but can I find out the duration of bond in percent of the whole trajectory time ? Please help me if there is such an option in the same.
With thanks, Vivek 2008/11/20 Mark Abraham <[EMAIL PROTECTED]> > vivek sharma wrote: > >> Hi All, >> I am analyzing the h-bond information for a mdrun using g_hbond. Can I >> know the % of trajectory time for which a bond between particular residue >> was existing? >> >> If anybody have tried such option please suggest me a way to do so. >> > > Have you started with reading g_hbond -h? > > Mark > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
_______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
