On 25/01/2012 12:54 AM, Spring buds wrote:
Removing files in /usr/local/gromacs has no bearing on the
contents of /usr/local/bin. If you did 'make links' at the end of
the installation, you will have dead links in /usr/local/bin that
need to be removed, as well.
-Justin
Dear Justin,
Thanks a lot for your insight.
I did links in the end so there is links in */usr/local/bin*. After
uninstall I still have dead links with */usr/local/bin. *could you
help me how to remove this**in***/usr/local/bin*.
1. cd /usr/local/bin
2. ls -l
3. look for broken links
4. sudo rm <names of broken links>
Hint: the majority of them will be named g_xxx so that makes for easy
wildcarding.
Mark
try make uninstall in the directory where you used make install
before. like Path_to//gromacs-4.5.5
and then make distclean
for a totally clear re-installation, removed the
/gromac-4.5.5 and
re-untar the gromacs-4.5.5.tar.gz
before that, further check the lib and bin have totally
removed or not.
Sure. I will do now
Which OS you are working on?
Linux (CentOS 5.7)
Thanks a lot.
>
>
> On Tue, Jan 24, 2012 at 2:31 AM, lina
<[email protected] <mailto:[email protected]>
<mailto:[email protected]
<mailto:[email protected]>>> wrote:
>>
>> On 24 Jan, 2012, at 1:53, Spring buds
<[email protected] <mailto:[email protected]>
<mailto:[email protected] <mailto:[email protected]>>>
wrote:
>>
>> > Dear Gromacs users,
>> >
>> > Greetings!!!
>> >
>> > I am very new users and I am trying to install grmacs
4.5.5 or
3.3.3 for
>> > past four days. But still I am not able to. So I would
like to
ask some
>> > questions which are below.
>> >
>> >
>> > 1.My laptop is a dual core, which means two processors?.So
should I need
>> > to install MPI?
>> >
>> --enable threads
>>
>> > 2.I installed gromacs 4.5.5 with mistakes. To remove
installing, I used
>> > the "which gromacs" and it shows as "/usr/bin/which: no
mdrun in
>> >
(/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/Malai/bin)".
>> > However, I used "rm -rf /usr/local/gromacs" to remove
installing I still can
>> > see tha gromacs files with red background in
"/usr/local/bin".
Could you
>> > tell me I removed the gromacs installing?
>>
>> You have not.
>>
>> >
>> > 3.Could you please tell me the very simple steps for
installatios, since
>> > I am a novice.
>>
>> http://www.gromacs.org/Downloads/Installation_Instructions
>>
>> >
>> > Many thanks in advance for your time and help.
>> >
>> > Huang Malai
>> > --
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
<tel:%28540%29%20231-9080>
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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