On Wed, Jan 25, 2012 at 7:42 PM, Mark Abraham <[email protected]>wrote:
> On 25/01/2012 12:54 AM, Spring buds wrote: > > > Removing files in /usr/local/gromacs has no bearing on the contents of >> /usr/local/bin. If you did 'make links' at the end of the installation, >> you will have dead links in /usr/local/bin that need to be removed, as well. >> >> -Justin >> > > > Dear Justin, > > Thanks a lot for your insight. > > I did links in the end so there is links in */usr/local/bin*. After > uninstall I still have dead links with */usr/local/bin. *could you help > me how to remove this* *in* **/usr/local/bin*. > > > 1. cd /usr/local/bin > 2. ls -l > 3. look for broken links > 4. sudo rm <names of broken links> > > Hint: the majority of them will be named g_xxx so that makes for easy > wildcarding. > > Mark > > > Dear Mark, Your reply was very helpful. Thanks. > > > > > > >> >> >>> >>> try make uninstall in the directory where you used make install >>> before. like Path_to//gromacs-4.5.5 >>> and then make distclean >>> for a totally clear re-installation, removed the /gromac-4.5.5 and >>> >>> re-untar the gromacs-4.5.5.tar.gz >>> >>> before that, further check the lib and bin have totally removed or >>> not. >>> >>> >>> Sure. I will do now >>> >>> >>> Which OS you are working on? >>> >>> >>> Linux (CentOS 5.7) >>> >>> Thanks a lot. >>> >>> >>> > >>> > >>> > On Tue, Jan 24, 2012 at 2:31 AM, lina <[email protected] >>> <mailto:[email protected]>> wrote: >>> >> >>> >> On 24 Jan, 2012, at 1:53, Spring buds <[email protected] >>> <mailto:[email protected]>> wrote: >>> >> >>> >> > Dear Gromacs users, >>> >> > >>> >> > Greetings!!! >>> >> > >>> >> > I am very new users and I am trying to install grmacs 4.5.5 or >>> 3.3.3 for >>> >> > past four days. But still I am not able to. So I would like to >>> ask some >>> >> > questions which are below. >>> >> > >>> >> > >>> >> > 1.My laptop is a dual core, which means two processors?.So >>> should I need >>> >> > to install MPI? >>> >> > >>> >> --enable threads >>> >> >>> >> > 2.I installed gromacs 4.5.5 with mistakes. To remove >>> installing, I used >>> >> > the "which gromacs" and it shows as "/usr/bin/which: no mdrun in >>> >> > >>> >>> >>> (/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/Malai/bin)". >>> >> > However, I used "rm -rf /usr/local/gromacs" to remove >>> installing I still can >>> >> > see tha gromacs files with red background in "/usr/local/bin". >>> Could you >>> >> > tell me I removed the gromacs installing? >>> >> >>> >> You have not. >>> >> >>> >> > >>> >> > 3.Could you please tell me the very simple steps for >>> installatios, since >>> >> > I am a novice. >>> >> >>> >> http://www.gromacs.org/Downloads/Installation_Instructions >>> >> >>> >> > >>> >> > Many thanks in advance for your time and help. >>> >> > >>> >> > Huang Malai >>> >> > -- >>> >> > gmx-users mailing list [email protected] >>> <mailto:[email protected]> >>> >>> >> > http://lists.gromacs.org/mailman/listinfo/gmx-users >>> >> > Please search the archive at >>> >> > http://www.gromacs.org/Support/Mailing_Lists/Search before >>> posting! >>> >> > Please don't post (un)subscribe requests to the list. Use the >>> >> > www interface or send it to [email protected] >>> <mailto:[email protected]>. >>> >>> >> > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> -- >>> >> gmx-users mailing list [email protected] >>> <mailto:[email protected]> >>> >>> >> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> >> Please search the archive at >>> >> http://www.gromacs.org/Support/Mailing_Lists/Search before >>> posting! >>> >> Please don't post (un)subscribe requests to the list. Use the >>> >> www interface or send it to [email protected] >>> <mailto:[email protected]>. >>> >>> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> > >>> > >>> > >>> > -- >>> > gmx-users mailing list [email protected] >>> <mailto:[email protected]> >>> >>> > http://lists.gromacs.org/mailman/listinfo/gmx-users >>> > Please search the archive at >>> > http://www.gromacs.org/Support/Mailing_Lists/Search before >>> posting! >>> > Please don't post (un)subscribe requests to the list. Use the >>> > www interface or send it to [email protected] >>> <mailto:[email protected]>. >>> >>> > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> -- >>> gmx-users mailing list [email protected] >>> <mailto:[email protected]> >>> >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to [email protected] >>> <mailto:[email protected]>. >>> >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >>> >>> >> -- >> ======================================== >> >> Justin A. Lemkul >> Ph.D. Candidate >> ICTAS Doctoral Scholar >> MILES-IGERT Trainee >> Department of Biochemistry >> Virginia Tech >> Blacksburg, VA >> jalemkul[at]vt.edu | (540) 231-9080 >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >> >> ======================================== >> >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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